SHIF-ting strategies: Biometrics, OTPs and MoH’s never-ending patient verification struggle
File image of the Ministry of Health headquarters at Afya House in Nairobi.

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The Kenyan government’s quest for a secure, efficient public health insurance system has seen it pivot from biometric patient verification to one-time passwords (OTPs) and now back again; yet each technological turn has been marred by system flaws and vulnerabilities ripe for abuse.
The Ministry of Health (MoH) introduced biometric patient
verification with the now-defunct National Health Insurance Fund (NHIF) in 2021
to streamline health service access and reduce fraud by phasing
out the use of national ID cards at hospitals.
Patients could access services under the public healthcare
scheme by scanning their fingerprints to authenticate their identity, in a move
also touted as a solution to administrative delays.
From the onset, however, it faced opposition from hospitals,
especially those in rural areas. The Rural and Urban Private Hospitals
Association of Kenya (RUPHA) sued NHIF, arguing that the biometric requirement
was introduced abruptly, without consultation, and imposed significant costs on
facilities.
Still, the government moved on with it, until a few years
down the line when it emerged that the verification system was a goldmine for fraudsters;
rogue hospitals abused the system by using a single fingerprint to file claims
for thousands of fictitious beneficiaries.
In a January 2024 report, then-Health Cabinet Secretary Susan Nakhumicha said some hospitals even revived dormant NHIF accounts,
cooked up claims, and used biometrics collected from elsewhere – some reportedly
from students – to milk money from the fund.
The minister at the time said the fraud cost the government
at least Ksh.20 billion.
But RUPHA rejected the claims, terming them a ploy to
tarnish NHIF’s image and possibly make the case for why a change to a new
public healthcare scheme was needed.
OLD AND NEW PROBLEMS
With the switch to SHIF in October 2024 came OTP, a security code used for a single login
attempt or transaction.
OTPs are sent via SMS or email and are common globally in
preventing unauthorised access to accounts or systems.
The government hoped this would seal security loopholes and
tame medical claim fraud, only that it brought with it new issues and carried
some from the defunct NHIF’s biometric woes.
It was riddled with issues such as poor mobile coverage woes
for patients in rural areas, delayed verifications, and failed requests from healthcare
providers. Hospitals also decried system downtime and frequent updates.
RUPHA, in a February 2025 SHIF status update, said a
staggering 89 per cent of patient authentication requests faced challenges, with
OTP delays in 71 per cent of the requests, some of up to 24 hours.
Additionally, the association said 73 per cent of the time, SHIF’s
system was down. This meant patients were being forced to pay out of pocket for
health services, despite contributing to the public insurance scheme.
By this time, MoH had begun hinting at plans to revert to biometric
authentication to promote efficiency.
Meanwhile, reports of corruption persisted; the health
ministry said some unscrupulous healthcare providers were exploiting the OTP
system by misusing patients’ fingerprints to process fictitious claims.
“We will shift back to biometric since this is the only way
we can curb corruption. With NHIF, the biometrics were just at facility level,
and some of the corrupt health care providers would take their own fingerprints,
which would then be used by thousands of patients within the facility,” then-Health
CS Deborah Barasa told Daily Nation in a December 2024 interview.
BACK TO THE FINGERPRINT
This week, MoH made a U-turn, and the current Health CS,
Aden Duale, announced the abandonment of OTP verification for SHIF claims. He
cited operational challenges, public feedback, and corruption.
“SHA will no longer accept OTP based authorisation. All
approvals must be completed using a biometric health ID or the Practice 360
app,” Duale said on Monday.
He was referencing a new mobile application healthcare workers
will now use to review, approve, and manage pre-authorisation claims, which the
CS touts as a solution to unauthorised sharing of the pre-authorisation
approval codes by doctors.
Duale added that biometric identification was now live at
Level 4, 5, and 6 hospitals and was on course to be onboarded at lower-level health
centres countrywide.
In the lead up to Monday’s announcement, MoH says it has
been distributing biometric authentication devices to public health facilities
across the country.
The ministry claims fingerprint data is now linked to a
central database for real-time validation, with the ability to detect duplicate
or suspicious claims using automated pattern recognition tools.
However, going by the rampant failures the OTP system faced,
the Practice 360 app’s efficiency remains to be seen, as does its performance
in areas with poor network connections.
Additionally, it is not clear how well hospitals are
prepared for the rollback since facilities abandoned the biometric verification
equipment since the NHIF-to-SHIF transition nearly a year ago.
MoH is betting on tech to clean up its act. The latest move is, as
Duale called it on Monday, “the beginning of a clean break from the past, where
fraudulent claims and identity manipulation undermined the integrity and
sustainability of our health insurance systems.”
Whether this bet pays off or becomes another costly loop in
a reform-and-relapse cycle remains to be seen.
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